Bioinformatics Software Engineer

AccuraGenSan Jose, California

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Overview

Schedule

Full-time

Career level

Senior-level

Benefits

Health Insurance

Dental Insurance

Vision Insurance

Job Description

Description

As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your contributions will directly impact innovative scientific discoveries and product development. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.

Responsibilities:

Design, implement, and develop tests and documentation for established robust bioinformatics pipelines.
Optimize computational workflows for high-performance execution and reproducible data analysis.
Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows.
Manage GitHub repositories, oversee version control, and streamline the software release process.
Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency.
Collaborate with cross-functional teams to integrate bioinformatics solutions.
Proactively identify opportunities to enhance infrastructure efficiency and security.

Requirements

Qualifications:

Bachelor’s degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college.
Experience with bioinformatics workflow development and optimization, particularly using Nextflow.
Experience developing software following best practices, including comprehensive testing and clear documentation.
Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes).
Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda).
Excellent communication and collaborative skills.

Preferred Qualifications:

Familiarity with CI/CD practices.
Experience with infrastructure-as-code (Terraform, CloudFormation).

Benefits

Health Care Plan (Medical, Dental & Vision)
Retirement Plan (401k, IRA)
Paid Time Off (Vacation, Sick & Public Holidays)

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FAQs About Bioinformatics Software Engineer Jobs at AccuraGen

What is the work location for this position at AccuraGen?

This job at AccuraGen is located in San Jose, California, according to the details provided by the employer. Some roles may also include multiple work locations depending on the requirement.

What pay range can candidates expect for this role at AccuraGen?

Employer has not shared pay details for this role.

What employment applies to this position at AccuraGen?

AccuraGen lists this role as a Full-time position.

What experience level is required for this role at AccuraGen?

AccuraGen is looking for a candidate with "Senior-level" experience level.

What benefits are offered by AccuraGen for this role?

AccuraGen offers following benefits: Health Insurance, Dental Insurance, Vision Insurance, and 401k Matching/Retirement Savings for this position. Actual benefits may vary depending on the employer's policies and employment terms.

What is the process to apply for this position at AccuraGen?

You can apply for this role at AccuraGen either through Sonara's automated application system, which helps you submit applications 10X faster with minimal effort, or by applying manually using the direct link on the job page.